programme

Monday, March 04, 2024

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Opening and Registration

Welcoming Address - The Organizing Committee

Session 1: Cell-free DNA composition and biology
Chairs: Ellen Heitzer & Jochen Geigl

DNA methylation-based liquid biopsies 
       
Yuval Dor, Israel
Mining for hidden cell-free DNA gems
Florent Moulière, Netherlands
Influence of lifestyle and biological factors on cirDNA
Kristina Warton, Australia
Unraveling the genetics of cell-free DNA biology using GWAS
Jasper Linthorst, Netherlands
Elucidating the origins of circulating DNA in diverse cancer types using Nanopore whole-genome sequencing
Ben Berman, Israel
Sponsored Talk by Illumina 
Whole exome sequencing of cfDNA in metastatic prostate cancer
Tina Moser, Austria

Coffee Break & Poster viewing

Session 2: Fragmentomics & cfDNA fragments
Chairs: Tina Moser & Amit Roshan

Expanding the spectrum of cfDNA fragmentomics

Dennis Lo, Hong Kong
Novel insights on cirDNA fragmentomics and cancer screening
Alain Thierry, France
Analysis of plasma DNA fragment ends for cancer detection and monitoring
Muhammed Murtaza, USA
Early detection of cancer using cfDNA fragmentomes 
Victor Velculescu, USA
A novel approach for DNA footprinting using short double-stranded cell-free DNA from plasma
Jan Müller, Germany
Fragmentomics-based methylation analysis (FRAGMA) of urinary DNA enables detection and localization of cancer in urinary system
Qing Zhou, Hong Kong

Poster Session 1
Best Poster Candidates Flash Presentations (Topics 1-4 & 10)
Coffee break & Poster Viewing

Session 3: cfDNA in Physiological and pathological conditions 
Chairs: Kristina Warton & Yuval Dor
        
Liquid biopsy for infectious disease
Iwijn De Vlaminck, USA
cfDNA and transplantation
Sean Agbor Enoh, USA
NIPT update
Bernhard Zimmermann, USA
Noninvasive prenatal testing using cfDNA and cfRNA: Advances, Challenges and Possibilities
Mira N Moufarrej, USA
Circulating, cell-free methylated DNA indicates source of allograft injury post-liver transplant
Megan E. McNamara, USA
Production and origin of circulating DNA and its diagnostic potential in inflammatory diseases
Ekaterina Pisareva, France

Welcome Reception 

Speaker Dinner (upon invitation only)                  

Tuesday, March 05, 2024

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Session 4: Nucleosomes  & open chromatin
Michael Speicher Memorial Lecture
Chairs: Sarah-Jane Dawson & Tommy Kaplan

EPINUC: Single-molecule, multi-modal, analysis of the Epigenetics of Plasma Isolated Nucleosome
Efrat Shema, Israel
Nucleosome Patterns in ctDNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes
Robert Patton, USA
TSS profiling to understand response to therapy
Dineika Chandrananda, Australia
Legacy unveiled: Continuing the journey of nucleosomepositioning in honor of Prof. Michael Speicher
Isaac Lazzeri, Austria & Benjamin Gernot Spiegl, Austria
High-resolution maps of human nucleosomes from circulating cell-free DNA
Roni Schwartz, Israel
Universal cell-free DNA Breakpoints in Cancer Patients: Unravelling Chromatin State Nucleosome Dynamics for Advanced Liquid Biopsy Detection
Andrew Johnston, Australia

Coffee Break & Poster viewing

Session 5: Oncology - Early Detection  
Chairs: Heather Parsons & Alain Thierry          

Early detection nasopharyngeal cancer 

Allen Chan, Hong Kong
cfDNA in Early Detection of Cancer 
Nickolas Papadopoulos, USA
Detection of pregnancy complications from NIPS profiles
Joris Vermeesch, Belgium
Complementary analysis of epigenetic and genetic features in plasma und urinary cell-free DNA at first diagnosis of prostate cancer for early detection and risk stratification
Anja Lisa Riediger, Germany
Circulating Tumor DNA Shedding and Risk of Recurrence in Asymptomatic and Symptomatic Colorectal Cancer Patients: A Comparative Study
Nadia Øgaard, Denmark
Sponsored Talk by ClearNote Health
Epigenomic tools for early cancer detection and therapy response
Gulfem Guler, USA

Lunch & Poster viewing

Session 6: Oncology - MRD
Chairs: Samantha Hasenleithner & Isaac Garcia-Murillas 

Circulating Tumor DNA for Minimal Residual Disease Detection and Risk-Stratified Recurrence Surveillance
Claus Andersen, Denmark
MRD in Breast cancer
Heather Parsons, USA
WGS for sensitive ctDNA cancer monitoring
Alexandre Pellan Cheng, USA
Association between tumor driver mutations and the presence of post-surgical circulating tumor DNA: Insights into tumor biology
Miller M. Richters, USA
Whole genome sequencing with ppmSeq™ enables efficient and scalable rare variant detection in cell free DNA
Itai Rusinek, Israel

Poster Session 2
Best Poster Candidates Flash Presentation (Topics 5-9)
Coffee Break & Poster Viewing

Session 7: Oncology -  Monitoring
Chairs: Julia Valdemarin Burnier & Claus Lindbjerg Andersen                                                

Monitoring low volume disease in cell-free DNA
Luis Diaz, USA
Treatment-dependent evolution of ctDNA (epi-)genomic features in metastatic prostate cancer
Alexander W. Wyatt, Canada
Monitoring treatment response in patients with metastatic colorectal cancer
Remond Fijneman, Netherlands
HPV-ctDNA correlates with disease stage in multiple liquid biopsy analytes in cervical cancer and dysplasia patients
Sarah Tadhg Ferrier, Canada
Tumor-informed frequent ctDNA monitoring confirms the clinical validity in advanced cancer therapy
Satoshi Nishizuka, Japan

CNAPS Networking Evening

Wednesday, March 06, 2024

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Session 8: Clinical trials
Chairs: Remond J.A. Fijneman & Maximilian Diehn

The UK TRACC studies; tissue-free ctDNA-directed de-escalation of adjuvant therapy
Naureen Starling, United Kingdom
ctDNA analysis in breast cancer trials
Isaac Garcia-Murillas, United Kingdom
ctDNA guiding adjuvant chemotherapy in localised colorectal cancer: the DYNAMIC trial and beyond
Jeanne Tie, USA
The Dutch TRIDENT studies; lessons learned and future developments
Erik Sistermans, Netherlands
Microbial Cell-free DNA Sequencing of Plasma with the Karius Test for Diagnosis of Pneumonia in Immunocompromised Patients
Igor Vilfan, USA
Potential impact of microbial cfDNA-based metagenomic identification of pathogens on outcome for patients suffering from septic shock
Kai Sohn, Germany

Coffee Break & Poster viewing

Session 9: Bioinformatics approaches for cfDNA analyses 
Chairs: Dineika Chandrananda & Iwijn de Vlaminck

A DNA methylation atlas of normal human cell types

Tommy Kaplan, Isreal
cfDNA WGS  as a community tool 
Hui Zhao, United Kingdom
Novel Bioinformatics/ML approaches for ctDNA analysis: Examples in Triple Negative Breast Cancer 
Ros Cutts, United Kingdom
Improving ctDNA detection by statistical modeling of sequencing errors
Jakob Skou Pedersen, Denmark
Comprehensive longitudinal tracking of lung cancer evolutionary clonal dynamics during therapy using circulating tumour DNA
Alex Frankell, United Kingdom
Application of Nanopore sequencing for liquid biopsy analysis in children with cancer
Carolin Sauer, United Kingdom

Lunch & Poster viewing        

Session 10: Emerging Frontiers
Chairs: Ellen Heitzer & Dennis Lo

Accessible and frequent testing using cell-free DNA from dried blood spots

Nitzan Rosenfeld, United Kingdom
Ultrasensitive ctDNA analysis for detection of minimal residual disease
Maximilian Diehn, USA
Cell-Free DNA Dynamics of Human Spaceflight (online) 
Christopher Mason, USA
Plasma Cell-free RNA Signatures of Inflammatory Syndromes
Conor Loy, USA
Dynamic size and association profiles of tumour-derived DNA during pancreatic cancer progression
Daniel Hagey, Sweden

Announcements of Poster Prize Winner and next CNAPS
Closing remark                 

Please note that this is only a preliminary programme which is subject to change.

CNAPS2024 Meeting Organizer                                            

Wiener Medizinische Akademie (WMA)

Alser Str. 4, 1090 Wien